Questioning is a normal and healthy part of learning. Every teacher I know loves students who ask questions, because it shows they are interested and learning. God certainly does not mind when we ask Him questions. Furthermore, God has answers to our questions. The Bible is full of answers on all kinds of subjects. God gave us a command to love Him with all our heart, soul, mind, and strength (Mark 12:30). Some people act as if an intellectual pursuit of God is either unnecessary or ungodly. However, God created our minds so we can think using reason and logic, and He is the One who said we should love Him with “all” our mind. We cannot do that if we are not fully convinced that the Bible is true.
Asking questions is a vital part of learning, and God tells us to ask Him if we need wisdom:
If any of you lacks wisdom, he should ask God, who gives generously to all without finding fault, and it will be given to him.
It is very important, however, that we understand the difference between questioning and doubting. I believe that many people who say they “question” the Bible actually mean they “doubt” it. I say that because, in my years of teaching the Bible, most people who have told me they “question” the Bible are not really looking for answers. They do not trust God, and are comfortable living with doubt and unbelief about Him and His Word. If the Bible is true, however, it is not wise to remain comfortable in unbelief. We are pleased when people trust us, and God is pleased when people trust Him. In fact, the Bible states clearly that “…without faith [trust] it is impossible to please God…” (Heb. 11:6a). God can answer questions and help us believe if we search for answers, but God cannot stop our doubt and unbelief if we are comfortable with them.
It is not necessary to live in unbelief and doubt. You can resolve any doubts or overcome any unbelief you may have if you desire to. How? By becoming clear on what you doubt and why you doubt it, and then diligently seeking answers. God tells us that when we diligently seek, we will get answers. Sometimes the answers come very quickly, sometimes after years of study and prayer, but they do come.
Do not wait until you have “all the answers” before you serve God. He is vast, and His creation is vast, and neither you nor I will ever have “all the answers.” There will always be things we have questions about and things we do not know, so do not put off serving God just because you have questions. Do the things you know God wants you to do. Many times the answers come as you are serving and obeying.